If you look at the diagrams below of the uptake of 50,000iu of vitamin d, TEN TIMES the amount you've take you can see how long it takes for that to be processed by the body and become fully effective.
Vitamin D2 Is Much Less Effective than Vitamin D3 in Humans
It used to be the case that they used megadoses of 300,000iu every 6 months to keep children at a reasonable level to prevent Rickets so in relation to those kinds of intakes 5000iu is a trivial amount.
People who have a reasonably high cholesterol level (who aren't taking statins or cholesterol lowering) should be able to make 10,000~20,000iu of Vitamin D3 Cholecalciferol given NON BURNING midday sun exposure turning every 5 minutes so the total skin surface is regularly exposed 20minutes should be fine. The point is that 5000iu is NOT a high intake as far as your DNA is concerned. Naturally your body is set to cope with much higher amounts of the same stuff.
It's possible there is some digestive issue with the carrier oil although most oil based capsules are so small the amount of oil they contain is so small it's hard to see how that could give rise to problems. Do bear in mind that placebo and nocebo effects occur with all oral medications and medical interventions. Mind does have a real impact over how your body responds.
You may want to try piercing the capsule and massaging the contents into the skin surface. Vitamin d is made very near the skin surface and so this is the natural route for vitamin d absorption and it would avoid any gastric distress. A further alternative would be simply to chew/bite the capsule and hold the contents in the oral cavity and spitting out the capsule shell. Some people find sprays under the tongue are more effective.
City Assays �20 blood Spot Test will tell you if you are vitamin d replete. However the levels they suggest are not accepted as sensible by the Vitamin d experts. In practice Bone mineral density generally requires levels around 40ng/ml to ensure most people maximise calcium uptake thats' 100nmol/l
The maximum anti inflammatory benefit from vitamin d occurs around 50ng/ml = 125nmol/l and if you think human milk should be a complete vitamin d replete food for human babies then you'd need 60ng/ml or 150nmol/l.
The reason the original humans settling at the latitude of the UK survived is because that had paler skins that enabled the storage of vitamin d3. The half life of vitamin d once in your plasma is about 27 days.
Imagine you could only earn money during the summer.
And then understand your bank savings halved every 3/4 weeks.
You can see that to go from September through the March and still have sufficient savings to deal with any emergency you'd need to build up a huge capital by the end of summer. Which is why paler skinned humans living near naked outdoor lives are set to make more vitamin d daily than they bodies actually use daily. However as your supply of vitamin d capsule is substituting for daily full body sun exposure you don't need to store D3 or build up a huge capital surplus to last through the winter. You just need sufficient to keep level adequate to deal with inflammation.
Do remember that the amounts required by people who live in the USA are generally less than those in Scotland because there is less vitamin d from sunshine available in Scotland the USA also have more Vitamin d fortified foods than UK/EU.
Also remember that UVA (sunlight through glass/car windows) degrades vitamin d in the skin or near the skin surface so if you do massage the vitamin d capsule contents into your skin it would be best done on some skin that usually covered by clothing (protected from uva exposure.)