Nice post Jofus,
Your story/explanation sounds just like mine
Seems like you found a good naturopath, I think he knows what he's talking about. It took me a year and a half to reach the conclusions you have already!
I also overexerted myself physically, in a big way... I was doing martial arts classes and competing every day for like 2 years as well as having lots of sex, drinking, smoking pot, sitting a lot.. thought I was invincible, I sure felt like it for a while
Then I had some bad relationship problems with my girlfriend which really stressed me out for a long time, started having anxiety problems, kept overworking myself, my immune system and digestive systems started weakening, then I got the flu really bad for like 2-3 weeks, and instead of letting myself recover, went right back to training all the time.. things were down hill from there.. developed full on panic disorder, having panic attacks almost daily for months, agoraphobia, etc.. I felt fatigued all the time, started waking up in the middle of the night, started fatiguing during exercise very quickly.. then I also went through a depression.. shortly after all that I started having weak erections + urinary symptoms + occasional cloudy urine = prostatitis..
Saw a few doctors who werent very helpful, one who gave me a month of antibiotics + viagra, etc. they just made me more sick.
Over time I gradually made the connection with overworking myself physically, mentally and sexually. So I made an effort to cut back/heal all 3.. now I dont do as much martial arts, and a more gentle style, and I do yoga 3 times a week, I saw a psychologist for anxiety which helped, but worked on that a lot myself, now I dont have panic attacks anymore, I also made an effort to cut back on my ejaculations. I also have adjusted my diet to exclude irritating foods and add in all the good ones.
Doing very well at the moment.. I still dont feel like im 100% where I was before all this started if im being honest (2 years later) but I only get better and better with time. My physical endurance is back, my mind is relatively calm, im happy, sexually im doing pretty well, but my libido isnt quite what it once was.. as far as urinary stuff.. only minor symptom is a slight bit of weak stream at the end.. or I get like 1/2 drops that can come out after I stop peeing, but I have a method to deal with it, where I just rub the urethra to milk it out.
I agree that once you get to this point, it takes time to get better.. so dont freak out if you dont find a magic pill that cures you in a minute... for me its been 2 years and im at like 90%..
I also have had digestive issues though as well and I believe its all connected. My digestion has been improving though with diet, lifestyle. I have unusual looking stools, gas, burping.. There is definitely a connection..
I also have and had tense pelvic floor muscles, and ive seen some therapists to work on it, with some improvement.